Computational Bioimaging
1.0
Computational Imaging
Exercise: Images as numerical data
Exercises: Introduction to Fiji
Exercises: Analysing cell tissue
Exercises: Metadata
Exercises: Using OMERO
Exercises: Interacting with microscope files
Computational Bioimaging
Docs
»
Welcome to Computational Bioimaging’s documentation!
View page source
Welcome to Computational Bioimaging’s documentation!
¶
Contents:
Computational Imaging
Introduction
From microscope to data
Working with 3D images
Image measurements
Processing images
Mass processing of data
References
Exercise: Images as numerical data
Loading an image
Exercises: Introduction to Fiji
A quick introduction to Fiji
Exercises: Analysing cell tissue
Loading the data
Thresholding
Adaptive Thresholding
Measurement
Tidying up
More measurements
Exporting the results
Exercises: Metadata
Exercises: Using OMERO
Connect to OMERO
View an image
Download an image
Install the OMERO plugin with Fiji
Use Fiji to Connect to OMERO
Exercises: Interacting with microscope files
Finding out about the files
Dealing with 3D data
Measuring things
Processing images