Welcome to Computational Bioimaging’s documentation!

Contents:

• Computational Imaging
  • Introduction
  • From microscope to data
  • Working with 3D images
  • Image measurements
  • Processing images
  • Mass processing of data
  • References
• Exercise: Images as numerical data
  • Loading an image
• Exercises: Introduction to Fiji
  • A quick introduction to Fiji
• Exercises: Analysing cell tissue
  • Loading the data
  • Thresholding
  • Adaptive Thresholding
  • Measurement
  • Tidying up
  • More measurements
  • Exporting the results
• Exercises: Metadata
• Exercises: Using OMERO
  • Connect to OMERO
  • View an image
  • Download an image
  • Install the OMERO plugin with Fiji
  • Use Fiji to Connect to OMERO
• Exercises: Interacting with microscope files
  • Finding out about the files
  • Dealing with 3D data
  • Measuring things
  • Processing images