Computational Bioimaging
1.0
  • Computational Imaging
  • Exercise: Images as numerical data
  • Exercises: Introduction to Fiji
  • Exercises: Analysing cell tissue
  • Exercises: Metadata
  • Exercises: Using OMERO
  • Exercises: Interacting with microscope files
Computational Bioimaging
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  • Welcome to Computational Bioimaging’s documentation!
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Welcome to Computational Bioimaging’s documentation!¶

Contents:

  • Computational Imaging
    • Introduction
    • From microscope to data
    • Working with 3D images
    • Image measurements
    • Processing images
    • Mass processing of data
    • References
  • Exercise: Images as numerical data
    • Loading an image
  • Exercises: Introduction to Fiji
    • A quick introduction to Fiji
  • Exercises: Analysing cell tissue
    • Loading the data
    • Thresholding
    • Adaptive Thresholding
    • Measurement
    • Tidying up
    • More measurements
    • Exporting the results
  • Exercises: Metadata
  • Exercises: Using OMERO
    • Connect to OMERO
    • View an image
    • Download an image
    • Install the OMERO plugin with Fiji
    • Use Fiji to Connect to OMERO
  • Exercises: Interacting with microscope files
    • Finding out about the files
    • Dealing with 3D data
    • Measuring things
    • Processing images
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© Copyright 2015, Matthew Hartley.

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