A hands-on introduction to ChIP-Seq!

• Introduction
• Getting started
  • Logging into your HPC accounts
  • Acquiring files for the tutorial
• Alignment using Bowtie-2
• Launching IGV
  • Adding your alignments as new feature tracks
• Peak finding with MACS
  • Analysing the results
• Identifying a core motif using MEME
• Revisiting the ASR1 analysis
• A further example for homework - Human data!

Indices and tables

• Index
• Module Index
• Search Page