RNASeq course
Contents:
Introduction
Experiment Design
A brief introduction to linux shell
RNA Seq raw data
Gapped Alignment
Measuring expression levels from RNA Seq data
De novo RNA Seq assembly
RNASeq course
Docs
»
RNA Seq course
View page source
RNA Seq course
ΒΆ
Contents:
Introduction
Experiment Design
Exercise
A brief introduction to linux shell
Navigating in the file system
Some more commands
Redirect and pipe
Exercises
RNA Seq raw data
MD5Sum
The fastq file format
Quality control
Quality trimming
Exercise
Gapped Alignment
Hands-on exercise
Mapping
Processing with SAMTOOLS
Data visualization
Exercise
Measuring expression levels from RNA Seq data
Expression values / Transcript abundance
Calculating expression values
Exercise
De novo RNA Seq assembly
Exercise